miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|31464669|gb|CD406682.1|CD406682 TTTTTTTTTTTTTAATCAGTTCAATTAATGCTGCTAAAAAAGTAGCATTCAAATGATTAATCACACAAATGTGCATATAC
ATCGAAATATAGCGCATTAATTAGTACCATCATCTTAATTAATTAAGCTAAATGAGAATAAAGAAAACTAATTAAGCTTG
ATTTCCATGAATTATGAAGTCTTCAAGGGCTTGCAAATACTGTCACGGCTAGCTAGCACACATTTTATTCAGGAATAATG
AAGTATAGCATCATGAGCAATCAGCCTTAGATTTTTTTAGCAGATTGACTGCTCATGATGTTATATCATTTCCATGAATT
TACCTCTATGCATGCTACCATATTTATATGTATATGCTGCCCCATTTGTAAAAAACTCCTAACGAAAGCCCCCTCCTAGG
GCTGGAGCCCAATAATCTGCTCCATTGTCACTTCCAACTTGCAGTGTGCATGACACTGGCACCAGACACAACCCTCTACT
CCTCAGCCCCTTCTTTGGTTCTTCTTGAGTATCCGGCTCTCCAGCTGCTTTCCTCTTCAAGCAGTTTTCATCCAGCAGCT
GACCGGGGTCTTCAGGGAATATACCCTCGTGC




Most similar to sp|Q8S3D1|BH068_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8S3D1|BH068_ARATH Transcription factor bHLH68 OS=Arabidopsis
           thaliana GN=BHLH68 PE=2 SV=2
          Length = 407

 Score =  105 bits (262), Expect = 2e-22
 Identities = 49/68 (72%), Positives = 55/68 (80%), Gaps = 5/68 (7%)
 Frame = -2

Query: 582 IFPEDPGQLLDENCLKRKAAGEPDTQ-----EEPKKGLRSRGLCLVPVSCTLQVGSDNGA 418
           IFPEDPGQL+++ C+KR+ A    T      EEPKK LRSRGLCLVP+SCTLQVGSDNGA
Sbjct: 335 IFPEDPGQLVNDQCMKRRGASSSSTDNQNASEEPKKDLRSRGLCLVPISCTLQVGSDNGA 394

Query: 417 DYWAPALG 394
           DYWAPALG
Sbjct: 395 DYWAPALG 402